How to Plan a 2-Week Peru Itinerary Including Machu Picchu and the Amazon
Split your 2 weeks between Lima (2 days), Cusco region including Machu Picchu (6-7 days), and the Amazon (4-5 days). Book Machu Picchu permits 2-4 months ahead and choose Puerto Maldonado for easier Amazon access or Iquitos for deeper jungle experience.
- Book Machu Picchu permits first. Reserve your Machu Picchu entrance tickets and Huayna Picchu climb (if desired) 2-4 months in advance at machupicchu.gob.pe. You need your passport number. Choose morning slots (6am or 8am) for better weather and photos.
- Choose your Amazon gateway. Puerto Maldonado offers 3-4 day lodge experiences and is closer to Cusco (1-hour flight). Iquitos provides deeper Amazon immersion with 4-7 day river cruises but requires flying via Lima. Book Amazon accommodations 6-8 weeks ahead.
- Plan your altitude acclimatization. Arrive in Cusco at least 2 days before attempting Machu Picchu. Consider flying Lima to Cusco on day 3 of your trip after low-altitude Amazon time, or build in 3 full Cusco acclimatization days if going directly from Lima.
- Structure your 14-day flow. Option A - Amazon first: Lima (2 days) → Puerto Maldonado (3-4 days) → Cusco/Sacred Valley (6-7 days) → Lima (1 day). Option B - Cusco first: Lima (2 days) → Cusco region (7-8 days) → Iquitos Amazon (4-5 days) → Lima (1 day).
- Book internal flights early. Reserve Lima-Cusco, Lima-Puerto Maldonado, or Lima-Iquitos flights 6-10 weeks ahead. LATAM and Avianca have the most reliable schedules. Morning flights reduce weather delays.
- Plan Sacred Valley logistics. Base in Ollantaytambo (closer to Machu Picchu) or Cusco (more services). Book the train to Aguas Calientes 4-6 weeks ahead - PeruRail or Inca Rail. The Vistadome service offers good value.
- How far in advance should I book Machu Picchu?
- Book 2-4 months ahead, especially for May-September dry season. Huayna Picchu mountain climb tickets sell out even faster and should be booked as soon as available.
- Is altitude sickness really a problem in Cusco?
- Yes. Cusco sits at 11,200 feet. Most visitors experience some symptoms. Arrive 2-3 days early, avoid alcohol, drink lots of water, and consider prescription medication like acetazolamide.
- Which is better for the Amazon - Puerto Maldonado or Iquitos?
- Puerto Maldonado is easier logistics (1-hour flight from Cusco) with good wildlife viewing. Iquitos offers deeper jungle immersion but requires flying via Lima. Choose based on your time and adventure level.
- Can I do this itinerary in reverse order?
- Yes. Starting with Cusco/Machu Picchu then ending with Amazon works well too. The key is allowing enough acclimatization time in Cusco regardless of when you visit.